Of computational genomics and sequence

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{"slip": { "id": 172, "advice": "If it still itches after a week, go to the doctors."}}

{"fact":"The most traveled cat is Hamlet, who escaped from his carrier while on a flight. He hid for seven weeks behind a panel on the airplane. By the time he was discovered, he had traveled nearly 373,000 miles (600,000 km).","length":217}

{"slip": { "id": 163, "advice": "Big things have small beginnings."}}

{"type":"standard","title":"John Joseph Williams","displaytitle":"John Joseph Williams","namespace":{"id":0,"text":""},"wikibase_item":"Q949953","titles":{"canonical":"John_Joseph_Williams","normalized":"John Joseph Williams","display":"John Joseph Williams"},"pageid":1909250,"thumbnail":{"source":"https://upload.wikimedia.org/wikipedia/commons/thumb/1/1d/John_Joseph_Williams_1902_Photograph.jpg/330px-John_Joseph_Williams_1902_Photograph.jpg","width":320,"height":488},"originalimage":{"source":"https://upload.wikimedia.org/wikipedia/commons/1/1d/John_Joseph_Williams_1902_Photograph.jpg","width":967,"height":1475},"lang":"en","dir":"ltr","revision":"1287711253","tid":"91313633-23c3-11f0-abce-f50f95746b3d","timestamp":"2025-04-27T23:58:51Z","description":"Catholic Archbishop of Boston (1822–1907)","description_source":"local","content_urls":{"desktop":{"page":"https://en.wikipedia.org/wiki/John_Joseph_Williams","revisions":"https://en.wikipedia.org/wiki/John_Joseph_Williams?action=history","edit":"https://en.wikipedia.org/wiki/John_Joseph_Williams?action=edit","talk":"https://en.wikipedia.org/wiki/Talk:John_Joseph_Williams"},"mobile":{"page":"https://en.m.wikipedia.org/wiki/John_Joseph_Williams","revisions":"https://en.m.wikipedia.org/wiki/Special:History/John_Joseph_Williams","edit":"https://en.m.wikipedia.org/wiki/John_Joseph_Williams?action=edit","talk":"https://en.m.wikipedia.org/wiki/Talk:John_Joseph_Williams"}},"extract":"John Joseph Williams was an American bishop of the Roman Catholic Church. He was the fourth Bishop and first Archbishop of the Archdiocese of Boston, serving between 1866 and his death in 1907.","extract_html":"

John Joseph Williams was an American bishop of the Roman Catholic Church. He was the fourth Bishop and first Archbishop of the Archdiocese of Boston, serving between 1866 and his death in 1907.

"}

{"type":"standard","title":"K-mer","displaytitle":"k-mer","namespace":{"id":0,"text":""},"wikibase_item":"Q6322851","titles":{"canonical":"K-mer","normalized":"K-mer","display":"k-mer"},"pageid":10573305,"thumbnail":{"source":"https://upload.wikimedia.org/wikipedia/commons/thumb/8/8a/K-mer_diagram.svg/330px-K-mer_diagram.svg.png","width":320,"height":472},"originalimage":{"source":"https://upload.wikimedia.org/wikipedia/commons/thumb/8/8a/K-mer_diagram.svg/488px-K-mer_diagram.svg.png","width":488,"height":720},"lang":"en","dir":"ltr","revision":"1288859537","tid":"8268f261-2960-11f0-ba9b-d6d8318774cd","timestamp":"2025-05-05T03:24:53Z","description":"Substrings of length k contained in a biological sequence","description_source":"local","content_urls":{"desktop":{"page":"https://en.wikipedia.org/wiki/K-mer","revisions":"https://en.wikipedia.org/wiki/K-mer?action=history","edit":"https://en.wikipedia.org/wiki/K-mer?action=edit","talk":"https://en.wikipedia.org/wiki/Talk:K-mer"},"mobile":{"page":"https://en.m.wikipedia.org/wiki/K-mer","revisions":"https://en.m.wikipedia.org/wiki/Special:History/K-mer","edit":"https://en.m.wikipedia.org/wiki/K-mer?action=edit","talk":"https://en.m.wikipedia.org/wiki/Talk:K-mer"}},"extract":"In bioinformatics, k-mers are substrings of length contained within a biological sequence. Primarily used within the context of computational genomics and sequence analysis, in which k-mers are composed of nucleotides, k-mers are capitalized upon to assemble DNA sequences, improve heterologous gene expression, identify species in metagenomic samples, and create attenuated vaccines. Usually, the term k-mer refers to all of a sequence's subsequences of length , such that the sequence AGAT would have four monomers, three 2-mers, two 3-mers and one 4-mer (AGAT). More generally, a sequence of length will have k-mers and there exist total possible k-mers, where is number of possible monomers.","extract_html":"

In bioinformatics, k-mers are substrings of length $\text{[math]}$ contained within a biological sequence. Primarily used within the context of computational genomics and sequence analysis, in which k-mers are composed of nucleotides, k-mers are capitalized upon to assemble DNA sequences, improve heterologous gene expression, identify species in metagenomic samples, and create attenuated vaccines. Usually, the term k-mer refers to all of a sequence's subsequences of length $\text{[math]}$ , such that the sequence AGAT would have four monomers, three 2-mers, two 3-mers and one 4-mer (AGAT). More generally, a sequence of length $\text{[math]}$ will have $\text{[math]}$ k-mers and there exist $\text{[math]}$ total possible k-mers, where $\text{[math]}$ is number o